Yi He Laboratory

Computer modeling of Biomolecules 


We are proud to provide computational training to our K-12 educators in New Mexico


 2023-01-16 Please note this opportunity. You can choose to work in any of the C-GEM-associated groups.


2022-12-02 Super happy to show a group of high school students from northern New Mexico how we use computational tools to explore drug/protein interaction in the Virtual Reality world and also on the huge screen in our Visualization Lab. Had to do Jurassic Park in VR too :-)


2022-11-19 The most powerful GPU, RTX 4090, in the house!!! Our 40-GPU group cluster consists of many different GPUs, such as RTX 4090, RTX 3090 Ti, RTX 3080 Ti, and so on. If you are interested in exploring what you can do with them, welcome to join us! No computational experience is required!


2022-10-11 Congratulations to Amy and John whose manuscript titled "Investigating the allosteric response of the PICK1 PDZ domain to different ligands with all-atom simulations" has been accepted by Protein Science

2022-10-05 Excited to see that the first computational experiment we designed for CHEM 1225L has taken off. Look at the beautiful PICK1 PDZ domain on the screen :-). We hope to bring more computational elements into our curriculum. 


2022-09-29 For the second time we are on UNM News! See it at https://news.unm.edu/news/unm-professors-earn-funding-for-chemistry-student-retention-program

2022-09-19 Congratulations to Emily whose manuscript titled "Insight into the initial stages of the folding process in Onconase revealed by UNRES" has been accepted by The Journal of Physical Chemistry B

2022-08-29 Congratulations to our ROSE scholar Peter whose presentation was selected by New Mexico Science Teachers Association (NMSTA).

2022-08-04 Congratulations to Amy whose manuscript titled "Three binding conformations of BIO124 in the pocket of the PICK1 PDZ domain" has been accepted by Cells

2022-07-15 Congratulations to Tongtong, Stefano, Ale, and the rest of the group whose manuscript titled "Recognizing the binding pattern and dissociation pathways of p300 Taz2 - p53 TAD2 complex" has been accepted by JACS Au

2022-07-12 Congratulations to Amy whose manuscript titled "Benchmarking the accuracy of AlphaFold 2 in loop structure prediction" has been accepted by Biomolecules

2022-06-24 Congratulations to Dr. Mark Walker (PI, visit Mark's group website here) and Dr. Yi He (Co-PI)  who received the NSF Partnerships for Research and Education in Chemistry (PREC) Track 1 Award.

2021-06-05 Welcome our 2022 ROSE scholars Ms. Vania Meetze and Mr. Petervon Tanedo

2022-02-28 Congratulations to our recent work titled "AlphaFold Models Illuminate Half of Dark Human Proteins" which has been accepted by the Current Opinion in Structural Biology

2022-01-27 Congratulations to Dr. Yi He who received the Autophagy, Inflammation, and Metabolism Center Core Capability Enhancement Award.

2022-01-25 Congratulations to Amy whose manuscript titled "Allosterism in the PDZ family" has been accepted by the International Journal of Molecular Sciences

2021-10-20 Still excited after the 2021 NM Science Fiesta at the Explora Science Museum. This is our first in-person Science, Technology, Engineering, Art, and Mathematics (STEAM) in Virtual Reality (VR) outreach in two years. We cannot wait to reach out to other parts of New Mexico! Big shout out to Amy and Emily! We would also like to thank the director of UNM Grand Challenges, Anita, for all her support!  


2021-09-30 Welcome Yujue to our group.

2021-09-03 Congratulations to the He group who received their first NSF grant. The whole group has been working very hard over the summer. Great job!!!

2021-06-25 Four weeks just fly by. We look forward to visiting our ROSE scholars at their school. See you in the Fall, Demvia and Gezi.


2021-06-02 Welcome our ROSE scholars Ms. Demvia Maslian (New Mexico Military Institute, Roswell) and Ms. Gezi Dejka (San Juan College High School, Farmington). 

2021-03-24 Congratulations to Amy who received the 2021 NSF-GRFP fellowship

2020-12-20 Congratulations to Amy whose manuscript titled "Residue-level contact reveals modular domain interactions of PICK1 are driven by both electrostatic and hydrophobic forces" has been accepted by Frontiers in Molecular Biosciences

2020-12-07 Congratulations to Tongtong and Amy who have passed the RP exam. Keep going!

2020-11-16 Congratulations to Amy who received the Smith/Dow Award for 2020. Detailed news can be found at http://chemistry.unm.edu/news-events/news/smith-dow-award-2020.html

2020-09-01 Our research was highlighted in the Grand Challenges Welcome Back Event.sud.png

2020-06-05 Article about our research by Sarah made to the front page of UNM News! Incredible! (Full article can be found at https://news.unm.edu/news/unm-professor-uses-computational-simulations-to-advance-substance-use-disorder-treatment)

2020-06-03 Laura was accepted into the graduate program at Virginia Tech. Congratulations! We will always miss you! 

2020-05-13 Thanks to Sarah for the news report on our PICK1 research at the  UNM Center for Advanced Research Computing (Full article can be found at http://carc.unm.edu/research/professor-simulates-substance-use-disorder-treatment.html)

2020-04-04 Congratulations to Tongtong, Amy, and Laura whose manuscript titled "Changes in structure and flexibility of p53 TAD2 upon binding to p300 Taz2" has been accepted by J. Theor. Comput. Chem.

2020-03-08 Congratulations to Dr. Yi He who received the Research Allocations Committee (RAC) Award.

2020-01-06 Congratulations to Dr. Yi He who was nominated by the University of New Mexico for the ORAU Ralph E. Powe Junior Faculty Enhancement Awards

2019-12-25 Congratulations to Laura and Laurie whose first manuscript titled "Performance of CHARMM36m with modified water model in simulating intrinsically disordered proteins: A case study" has been accepted by Biophysics Reports.

2019-11-15 Finally, we made it. Successfully hosted two workshops of using VR to enhance chemistry education for local high school students. Thank you all for helping to organize these workshops. 

2019-10-24 Thanks to everybody who organizes the Virtual Reality (VR) in Chemistry workshop.

2019-08-22 OMG - We will get access to the fastest supercomputer in the world - SUMMIT at Oak Ridge National Lab. About 1.5 times faster than the second-fastest supercomputer. 

2019-08-16 Yi received the Substance Use Disorders Grand Challenge Pilot Research Award.

2019-08-01 First manuscript submitted! Three more on the way!! go go go!!!!! 

2019-05-15 Jazzel received AMP scholarship.

2019-05-15 David received AMP scholarship.

2019-04-05 Congratulations to Dr. Yi He whose proposal was nominated by the University of New Mexico for the USDA NIFA HSI Education Grants Program.

2019-03-01 Welcome Jazzel and Laurie to our group.

2019-01-25 Congratulations to Dr. Yi He whose proposal was nominated by the University of New Mexico for the Moore Inventor Fellows Award by the Gordon and Betty Moore Foundation.

2019-01-10 Welcome Laura to our group

2018-12-03 Welcome David to our group.

2018-10-01 Welcome Christabel to our group.